PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09800.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 271aa    MW: 31395.3 Da    PI: 9.7762
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09800.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM385e-127416639118
                      NAM  39 iykvePwdLpk..kvkaeekew.yfFskrdkkyatgkrknra..........tksgyWkatgkdkevlskkgelvglkktLvfykg 111
                                +v P+ L +  ++k+  + w y  ++ + +++ ++ ++r+          + +gyWkatg dk++++ k+ ++ ++k Lv+y g
  Sme2.5_09800.1_g00004.1  74 FSTVSPSILTRimQIKSAAEIWeYLKMEYQGNERMQNMQRRMmrkegsveesAGNGYWKATGADKDIKDDKNVTIRVRKALVYYYG 159
                              5566777776322444444455332222222222222222324446776666779**************99*************** PP

                      NAM 112 rapkgek 118
                              +apkg+k
  Sme2.5_09800.1_g00004.1 160 KAPKGQK 166
                              *****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139612.2E-91339IPR025314Domain of unknown function DUF4219
PROSITE profilePS5100510.1838204IPR003441NAC domain
PfamPF142231.0E-963114No hitNo description
SuperFamilySSF1019413.27E-11113202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNSETSFLTP PVFNGENYQA WAIRMTVHFE ALDLWEAIED DYEVAPLSDN STINQIKNHR  60
ENKTRKAKAK ACLFSTVSPS ILTRIMQIKS AAEIWEYLKM EYQGNERMQN MQRRMMRKEG  120
SVEESAGNGY WKATGADKDI KDDKNVTIRV RKALVYYYGK APKGQKKLIG LCMNIDFLEF  180
QIFLKEVPKD LKLDDWVLCG IQIKLYLPKE REFLQQNGDI ALVHCKTDFQ NADILMKALP  240
RARFKFLRKR LGVVALESRR SVESSASKAR H
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430401e-118AC243040.1 Solanum tuberosum chromosome 11 clone RH142N14, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-13NAC family protein